CGAL-Bindings (Python): Mesh from point cloud
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28-09-2022 - |
Question
Im trying to do a finite element analysis for the Aorta of a pacient and i have a cloud of 3d points :
XYZ = array([[ 23.4929, 126.6431, 78.2083],
[ 23.505 , 123.2618, 76.1998],
[ 23.52 , 124.356 , 80.4145],
...,
[116.4752, 136.5604, 79.988 ],
[ 107.8206, 136.9329, 73.7108],
[ 154.0807, 91.6834, 91.9668]])
Visualization:
![Aorta][1] [1]: http://i.stack.imgur.com/U25dM.png
For that i need to get the following arrays:
elem = {tetrahedrons made of 4 indexes}
faces = {triangules made of 3 indexes}
But my question is:
How can i get, using CGAL-bindings (for Python), the 3d triangulation of the point cloud and then get the tetrahedrons and triangles for the Mesh?
I already tried but the resulting 3d triangulation has indexes out of the len(XYZ) making no sense (result max index = 12000 vs len(XYZ) = 1949).
If someone that already used CGAL-bindings for python can help me with how to use it for this purpose or help me to comprehend the C++ code from CGAL Mesh Generation Examples, please :(.
http://doc.cgal.org/latest/Mesh_3/index.html#Chapter_3D_Mesh_Generation
#include <CGAL/Exact_predicates_inexact_constructions_kernel.h>
#include <CGAL/Mesh_triangulation_3.h>
#include <CGAL/Mesh_complex_3_in_triangulation_3.h>
#include <CGAL/Mesh_criteria_3.h>
#include <CGAL/Labeled_image_mesh_domain_3.h>
#include <CGAL/make_mesh_3.h>
#include <CGAL/Image_3.h>
// Domain
typedef CGAL::Exact_predicates_inexact_constructions_kernel K;
typedef CGAL::Labeled_image_mesh_domain_3<CGAL::Image_3,K> Mesh_domain;
// Triangulation
typedef CGAL::Mesh_triangulation_3<Mesh_domain>::type Tr;
typedef CGAL::Mesh_complex_3_in_triangulation_3<Tr> C3t3;
// Criteria
typedef CGAL::Mesh_criteria_3<Tr> Mesh_criteria;
// To avoid verbose function and named parameters call
using namespace CGAL::parameters;
int main()
{
// Loads image
CGAL::Image_3 image;
image.read("data/liver.inr.gz");
// Domain
Mesh_domain domain(image);
// Mesh criteria
Mesh_criteria criteria(facet_angle=30, facet_size=6, facet_distance=4,
cell_radius_edge_ratio=3, cell_size=8);
// Meshing
C3t3 c3t3 = CGAL::make_mesh_3<C3t3>(domain, criteria);
// Output
std::ofstream medit_file("out.mesh");
c3t3.output_to_medit(medit_file);
return 0;
}
No correct solution