PubChem database into mysql
Question
I want to download the pubchem substance database and put all information into a MySQL database. Is this possible, and if so how?
Is there a script which automatically update the database?
Solution
Data is available on the PubChem FTP site: ftp://ftp.ncbi.nlm.nih.gov/pubchem/
OTHER TIPS
The PubChem download page makes it clear that you can download the results from specific searches in several formats.
It does not seem like there is a way for you to download the entire database. If you want a copy of their entire database, try contacting the helpdesk: info@ncbi.nlm.nih.gov
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