Your Artifactory should proxy external repositories with the most common artifacts and plugins. E.g. the maven-clean-plugin
should be resolved without any problems. If Artifactory is behind proxy, you should configure it in the Admin screen as described in the User Guide.
I would generally suggest going though it, it should answer all the mentioned questions.
Regarding freezes - if you deployed the war into existing Tomcat installation without configuring its JVM paramteres, the freezes you see are full GC cycles - you are running out of memory. That brings us to the User Guide again.