The main problems were with the application of the enter/update/exit pattern and also with forgetting to re-set the scale domains according to the new data. Here is the segment of interest:
function update() {
data = [20, 10, 3];
// must re-set scale domains with the new data
x.domain([0, d3.max(data)]);
y.domain(data);
var outer = chart.selectAll(".bar-outer")
.data(data);
// exit selection
outer
.exit()
.remove();
// enter selection
outer
.enter()
.append("rect")
.attr('class', 'bar-outer');
// update selection
outer
.transition()
.duration(500)
.ease("quad")
.attr("x", leftWidth)
.attr("y", y)
.attr("width", x)
.attr("height", y.rangeBand());
var inner = chart.selectAll(".bar-inner")
.data(data);
// exit selection
inner
.exit()
.remove();
// enter selection
inner
.enter()
.append("rect")
.attr('class', 'bar-inner');
// update selection
inner
.transition()
.duration(500)
.ease("quad")
.attr("x", leftWidth)
.attr("y", function (d) {
return y(d) + barTopMargin
})
.attr("width", function (d) {
return x(d) / 2;
})
.attr("height", barHeightInner);
};
Here is the complete FIDDLE.