fileReader.readAsBinaryString to upload files

Question

Trying to use fileReader.readAsBinaryString to upload a PNG file to the server via AJAX, stripped down code (fileObject is the object containing info on my file);

var fileReader = new FileReader();

fileReader.onload = function(e) {
    var xmlHttpRequest = new XMLHttpRequest();
    //Some AJAX-y stuff - callbacks, handlers etc.
    xmlHttpRequest.open("POST", '/pushfile', true);
    var dashes = '--';
    var boundary = 'aperturephotoupload';
    var crlf = "\r\n";

    //Post with the correct MIME type (If the OS can identify one)
    if ( fileObject.type == '' ){
        filetype = 'application/octet-stream';
    } else {
        filetype = fileObject.type;
    }

    //Build a HTTP request to post the file
    var data = dashes + boundary + crlf + "Content-Disposition: form-data;" + "name=\"file\";" + "filename=\"" + unescape(encodeURIComponent(fileObject.name)) + "\"" + crlf + "Content-Type: " + filetype + crlf + crlf + e.target.result + crlf + dashes + boundary + dashes;

    xmlHttpRequest.setRequestHeader("Content-Type", "multipart/form-data;boundary=" + boundary);

    //Send the binary data
    xmlHttpRequest.send(data);
}

fileReader.readAsBinaryString(fileObject);

Examining the first few lines of a file before upload (using VI) gives me

The same file after upload shows

So it looks like a formatting/encoding issue somewhere, I tried using a simple UTF8 encode function on the raw binary data

    function utf8encode(string) {
        string = string.replace(/\r\n/g,"\n");
        var utftext = "";

        for (var n = 0; n < string.length; n++) {

            var c = string.charCodeAt(n);

            if (c < 128) {
                utftext += String.fromCharCode(c);
            }
            else if((c > 127) && (c < 2048)) {
                utftext += String.fromCharCode((c >> 6) | 192);
                utftext += String.fromCharCode((c & 63) | 128);
            }
            else {
                utftext += String.fromCharCode((c >> 12) | 224);
                utftext += String.fromCharCode(((c >> 6) & 63) | 128);
                utftext += String.fromCharCode((c & 63) | 128);
            }

        }

        return utftext;
    )

Then in the original code

//Build a HTTP request to post the file
var data = dashes + boundary + crlf + "Content-Disposition: form-data;" + "name=\"file\";" + "filename=\"" + unescape(encodeURIComponent(file.file.name)) + "\"" + crlf + "Content-Type: " + filetype + crlf + crlf + utf8encode(e.target.result) + crlf + dashes + boundary + dashes;

which gives me the output of

Still not what the raw file was =(

How do I encode/load/process the file to avoid the encoding issues, so the file being received in the HTTP request is the same as the file before it was uploaded.

Some other possibly useful information, if instead of using fileReader.readAsBinaryString() I use fileObject.getAsBinary() to get the binary data, it works fine. But getAsBinary only works in Firefox. I've been testing this in Firefox and Chrome, both on Mac, getting the same result in both. The backend uploads are being handled by the NGINX Upload Module, again running on Mac. The server and client are on the same machine. The same thing is happening with any file I try to upload, I just chose PNG because it was the most obvious example.