If you want to find the shortest path to connect all nodes, then you should look at travelling salesman algorithms. I don't exactly see why you approach it as an HSP. The only reason I can think of is that you want to specify your starting cities, but it should be easy to fix that (if you need that I can post it) by changing your graph a bit.
edit: adding how to tweak your graph
Add 1 node (call it E) and only connect it to your starting and ending nodes. A TSP will compute a solution to your problem by connecting all your nodes. As E is only reachable by going from start to E and then to end, the solution (a cycle yes) will contain start - E - end. Then you remove the 2 edges to and from E and you have the optimal solution. Within the TSP, the path from start to end will be optimal.