Similar to this question I ran a microbenchmark to read a single element from a large matrix. I was surprised to see how much performances degrade when using row names:
m = matrix(1, nrow=1000000, ncol=10)
rownames(m) = as.character(1:1000000)
microbenchmark(m["3450", 1], m[3450, 1], times=1000)
Unit: microseconds
expr min lq median uq max neval
m["3450", 1] 176465.55 183443.369 185321.5540 185982.0840 522346.477 1000
m[3450, 1] 3.19 3.445 10.7155 14.1545 29.897 1000
I absolutely need to use row names to read my matrix elements. How can I improve performances?
UPDATE
I added benchmark results from Geoffrey answer and subset(). I have no idea why but subset() has much better read-only performances ([[]] allows for assignment, subset() does not):
microbenchmark(m["3450", 1], m[["3450", 1]], m[3450, 1], .subset(m, 1)["3450"], .subset(m, 1)[3450], times=1000)
Unit: microseconds
expr min lq median uq max neval
m["3450", 1] 176667.252 180197.435 181969.2900 185090.9155 254075.814 1000
m[["3450", 1]] 144.732 145.341 151.1440 191.9960 1096.183 1000
m[3450, 1] 2.900 3.290 4.4400 6.5025 22.391 1000
.subset(m, 1)["3450"] 2.704 3.140 4.1285 14.8740 43.134 1000
.subset(m, 1)[3450] 2.460 2.815 3.2680 13.0300 38.105 1000