Googling "BitDefender Java" gives a bunch of results indicating that BitDefender is aggressive about blocking Java-based software (such as NetLogo). The most useful-seeming link I see is:
but you might try the search yourself and see what you turn up.
So it seems this primarily a question about BitDefender, rather than primarily a question about NetLogo. If you need help configuring BitDefender, perhaps someone here can help you. Or, you might have better luck at http://forum.bitdefender.com or http://superuser.com than here; Stack Overflow is primarily for programming questions.