That issue has been reported, and I'm working on some enhancements (for a future major release) at the moment that should make both options a bit easier.
For now, you'll have to supply your own Tokenizer to the reader (so Super CSV uses yours instead of its own). I'd suggest taking a copy of Super CSV's Tokenizer and modifying with your changes. That way you don't have to modify Super CSV, and you won't waste time.