Microsoft has been warning developers since Windows 2000 that access to the HKLM branch of the registry should not be performed as normal user, as it will sooner or later be restricted to administrators. They also said you should not write to Program Files
.
They didn't enforce that rule until Windows Vista, so nobody felt the need to change anything.
Now you have it: don't write to HKLM as normal user - it doesn't work. Don't write your settings to Program Files
. It doesn't work.
Application run by the normal user may write their data to user folders and user hives in the registry, nowhere else.