Some controls include API for controlling their layout. For example, you can set the orientation of a ListView to Horizontal or Vertical or switch animation on or off in a TitledPane.
You can write your own skins to apply to existing controls and modify their layout.
Public API for control skinning is provided in Java 8.
Use the -fx-skin
attribute to change a skin via css.
More details are in the JavaFX wiki control skinning section.
Using custom skins you can completely change the layout and animations for a control. See for instance this carousel skin of a TreeView.