Update 01-29-14
Over on Github someone found a better solution than the one I posted previously. New Solution.
Open up your_packages_folder/SublimeCodeIntel/codeintel2/tree_php.py and add array to the tooltip ignore array around line 140.
php_ignored_calltip_expressions = ("if", "elseif",
"for", "foreach",
"while",
"switch",
"array"
)
Old solution
I found a temporary solution on github.
Comment out or delete line 100 & 101 in SublimeCodeIntel/codeintel2/tree_php.py
"array": "array(<list>)\n"
"Create a PHP array.",
Then delete the ~/.codeintel folder in your user dir on OS X, not sure where this cache lives on windows.