You can use the cross-product construction on NFAs just as you would DFAs. The only changes are how you'd handle ε-transitions. Specifically, for each state (qi, rj) in the cross-product automaton, you add an ε-transition from that state to each pair of states (qk, rj) where there's an ε-transition in the first machine from qi to qk and to each pair of states (qi, rk) where there's an ε-transition in the second machine from rj to rk.
Alternatively, you can always convert the NFAs into DFAs and then compute the cross product of those DFAs.
Hope this helps!