Obviously this problem is not solvable in the general case because you can construct a "function" which is arbitrarily complex. For example, if you have a "function" with 5 trillion terms in it including various transcendental and complex transformations in it, the computer could take years just to compute a single value, much less intersect it with another similar function.
So, first of all you need to define what you mean by a "function". If you mean a polynomial of degree less than 4 then the problem becomes much more straightforward. In such cases you combine the terms of the polynomial and find the roots of the equation, which will be the intersections.
If the polynomial has more than 5 terms (a quintic or greater) then there is no easy symbolic solution. In this case the terms are combined and you find the roots by iterative approximation. See Root Finding Algorithms.
If the function involves transcendentals such sin/cos/log/e^x, etc, you can potentially find the intersection by representing the functions as a series or a continued fraction. You then subtract one series from the other and set the value to zero. The solution of the continuous equation yields an approximation of the root(s).