I have figured out my own problem! The dialog is called "Results", so:
from ij import IJ
w = WindowManager
win = w.getWindow("Results")
win.removeNotify()
This closes dialog without asking whether saving is required.
Question
I am looping through image pairs and registering them with the TurboReg plugin in Fiji. I have some background in Python so am using Jython.
The problem is when TurboReg completes a dialog box appears which asks if you want to save results - I don't - I want to continue looping. How can I close or suppress the dialog box without having to do it manually?
I tried to recreate the problem succinctly, but I am new to Jython and Fiji so below is a snippet from my script minus some functions that call the images etc.
from ij import IJ
w = WindowManager
# dictionary of variables
d = {"t":target.path_to_image, "tCropRight":target.width-1, "tCropBottom":target.height-1, "s":source.path_to_image, "sCropRight":source.width-1, "sCropBottom":source.height-1}
# run TurboReg dialog
IJ.run("TurboReg ", "-align \
-file %(s)s 0 0 %(sCropRight)s %(sCropBottom)s \
-file %(t)s 0 0 %(tCropRight)s %(tCropBottom)s \
-bilinear \
1131 847 \
1595 1198 \
1131 4636 \
1595 6561 \
6188 847 \
8732 1198 \
6188 4636 \
8732 6561 \
-hideOutput" % d)
w.setCurrentWindow(w.getWindow("Output")) # select output window
IJ.run("Stack to Images") # stack to images
w.setCurrentWindow(w.getWindow("Data")) # select data window
IJ.run("16-bit") # convert to 16 bit
IJ.saveAs("Tiff", temp_nir) # save image
### CLOSE DIALOG BOXES! ###
Solution
I have figured out my own problem! The dialog is called "Results", so:
from ij import IJ
w = WindowManager
win = w.getWindow("Results")
win.removeNotify()
This closes dialog without asking whether saving is required.