For the click on the links, simply catch the click event and stop it:
$("a.editable-click").click(function(e){
e.stopPropagation();
});
The clicks within X-editable are a bit trickier. One way is to save a flag on weather the X-editable window is open or not, and only take action if X-editable is closed
var editableActive = false;
$("a.editable-click").on('shown', function(e, reason) {
editableActive = true;
});
$("a.editable-click").on('hidden', function(e, reason) {
editableActive = false;
});
$("div.version").click(function(e) {
var $this;
$this = $(this);
if(editableActive === false){
if ($this.hasClass("selected")) {
$(this).removeClass("selected");
} else {
$(this).addClass("selected");
}
}
});