First of all, sorry for my English (if I seem a bit rude, it's not my intention).
Usually you can move folders like /etc, /bin, /opt (and similar) into other partitions, even on different HDDs, you just have to copy the content of the folder into the new location and modify accordingly the fstab (pay attention during this step); BUT in this case there are some problems due to the type of the file-system used by Windows. If you move one of these folders into a NTSF-formatted file-system, you'll lose some features and you may have some security and stability issues. For this reason, I hardly discourage you to do so.
You can create a folder on the windows partition in which you can put all your big files that don't have to be executed (for ex. torrents, music, videos, pdf archive,...), create an empty folder in /home/YOUR_USER/WHERE_YOU_WANT, link this folder with the real one in windows and modify fstab to automatically mount the windows partition.
I suggest you to see this Arch-linux wiki on FSTAB: it's well written and quite exhaustive.