The reason for this is that you are using D2R. If you execute a query that matches every possible triple, this means that all mappings have to be resolved. This results in a lot of SQL (or whatever relation database you are using) queries.
There are two possible solutions:
Only do specific queries and use limits:
SELECT ?s ?p ?o WHERE {
?s ?p ?o
} LIMIT 10
SELECT ?s WHERE {
?s a uysie:DocumentFigures
} LIMIT 100
Or use the d2r rdf-dump tool and put the result in a rdf store