Tilde ~
is your home directory. In your case, probably /home/ionthas/
.
So your classpath:
~/home/ionthas/development/java/Jump2Box/lib/jars/lwjgl.jar
Would actually expand to:
/home/ionthas/home/ionthas/development/java/Jump2Box/lib/jars/lwjgl.jar
An extra home directory, hence the error.
Taking out the tilde ~
would probably do the trick.