You found the uninstallation command already, so let me show you how to make sure not to remove the wrong service.
Open the services management (e.g. via Start menu -> Computer -> right click -> Manage -> Services and Applications -> Services). Scroll to the MySQL server services and double click one that you want to uninstall. A dialog opens with various information about the service including a line "Path to executable:". The followoing line contains the full path to the server this service is for. You should only have one service for each of the servers. If that is not the case then you probably have to go through the registry and search for the service name and remove that key manually, until only one is left. Otherwise just use the path to run your uninstallation if that is for a server/service you don't want anymore.