Unable to load NLTK in spark using PySpark
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16-10-2019 - |
Question
I have install NLTK and its working fine with the following code, I running in pyspark shell
>>> from nltk.tokenize import word_tokenize
>>> text = "Hello, this is testing of nltk in pyspark, mainly word_tokenize functions in nltk.tokenize, working fine with PySpark, please see the below example"
>>> text
//'Hello, this is testing of nltk in pyspark, mainly word_tokenize functions in nltk.tokenize, working fine with PySpark, please see the below example'
>>> word_token = word_tokenize(text)
>>> word_token
//['Hello', ',', 'this', 'is', 'testing', 'of', 'nltk', 'in', 'pyspark', ',', 'mainly', 'word_tokenize', 'functions', 'in', 'nltk.tokenize', ',', 'working', 'fine', 'with', 'PySpark', ',', 'please', 'see', 'the', 'below', 'example']
>>>
When I try to run it using spark inbuild method map
it throwing error ImportError: No module named nltk.tokenize
>>> from nltk.tokenize import word_tokenize
>>> rdd = sc.parallelize(["This is first sentence for tokenization", "second line, we need to tokenize using word_tokenize method in spark", "similar sentence here"])
>> rdd_tokens = rdd.map(lambda sentence : word_tokenize(sentence))
>> rdd_tokens
// PythonRDD[2] at RDD at PythonRDD.scala:43
>>> rdd_tokens.collect()
I am using spark version:1.6.1 and python version: 2.7.9
Fullstack errors:
>>> from nltk.tokenize import word_tokenize
>>> rdd = sc.parallelize(["This is first sentence for tokenization", "second line, we need to tokenize using word_tokenize method in spark", "similar sentence here"])
>> rdd_tokens = rdd.map(lambda sentence : word_tokenize(sentence))
>> rdd_tokens
// PythonRDD[2] at RDD at PythonRDD.scala:43
>>> rdd_tokens.collect()
16/05/17 17:06:48 WARN org.apache.spark.scheduler.TaskSetManager: Lost task 0.0 in stage 2.0 (TID 16, spark-w-0.c.clean-feat-131014.internal): org.apache.spark.api.python.PythonException: Traceback (most recent call last):
File "/usr/lib/spark/python/pyspark/worker.py", line 98, in main
command = pickleSer._read_with_length(infile)
File "/usr/lib/spark/python/pyspark/serializers.py", line 164, in _read_with_length
return self.loads(obj)
File "/usr/lib/spark/python/pyspark/serializers.py", line 422, in loads
return pickle.loads(obj)
ImportError: No module named nltk.tokenize
at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:166)
at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:207)
at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:125)
at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:70)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
16/05/17 17:06:49 ERROR org.apache.spark.scheduler.TaskSetManager: Task 0 in stage 2.0 failed 4 times; aborting job
16/05/17 17:06:49 WARN org.apache.spark.scheduler.TaskSetManager: Lost task 1.3 in stage 2.0 (TID 23, spark-w-0.c.clean-feat-131014.internal): org.apache.spark.TaskKilledException
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:204)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/lib/spark/python/pyspark/rdd.py", line 771, in collect
port = self.ctx._jvm.PythonRDD.collectAndServe(self._jrdd.rdd())
File "/usr/lib/spark/python/lib/py4j-0.9-src.zip/py4j/java_gateway.py", line 813, in __call__
File "/usr/lib/spark/python/pyspark/sql/utils.py", line 45, in deco
return f(*a, **kw)
File "/usr/lib/spark/python/lib/py4j-0.9-src.zip/py4j/protocol.py", line 308, in get_return_value
py4j.protocol.Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.collectAndServe.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 2.0 failed 4 times, most recent failure: Lost task 0.3 in stage 2.0 (TID 22, spark-w-0.c.clean-feat-131014.internal): org.apache.spark.api.python.PythonException: Traceback (most recent call last):
File "/usr/lib/spark/python/pyspark/worker.py", line 98, in main
command = pickleSer._read_with_length(infile)
File "/usr/lib/spark/python/pyspark/serializers.py", line 164, in _read_with_length
return self.loads(obj)
File "/usr/lib/spark/python/pyspark/serializers.py", line 422, in loads
return pickle.loads(obj)
ImportError: No module named nltk.tokenize
at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:166)
at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:207)
at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:125)
at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:70)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Driver stacktrace:
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1431)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1419)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1418)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1418)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:799)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:799)
at scala.Option.foreach(Option.scala:236)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:799)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1640)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1599)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1588)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:620)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1832)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1845)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1858)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1929)
at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:927)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:150)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:111)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:316)
at org.apache.spark.rdd.RDD.collect(RDD.scala:926)
at org.apache.spark.api.python.PythonRDD$.collectAndServe(PythonRDD.scala:405)
at org.apache.spark.api.python.PythonRDD.collectAndServe(PythonRDD.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:231)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:381)
at py4j.Gateway.invoke(Gateway.java:259)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:133)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:209)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.spark.api.python.PythonException: Traceback (most recent call last):
File "/usr/lib/spark/python/pyspark/worker.py", line 98, in main
command = pickleSer._read_with_length(infile)
File "/usr/lib/spark/python/pyspark/serializers.py", line 164, in _read_with_length
return self.loads(obj)
File "/usr/lib/spark/python/pyspark/serializers.py", line 422, in loads
return pickle.loads(obj)
ImportError: No module named nltk.tokenize
at org.apache.spark.api.python.PythonRunner$$anon$1.read(PythonRDD.scala:166)
at org.apache.spark.api.python.PythonRunner$$anon$1.<init>(PythonRDD.scala:207)
at org.apache.spark.api.python.PythonRunner.compute(PythonRDD.scala:125)
at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:70)
at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
at org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
at org.apache.spark.scheduler.Task.run(Task.scala:89)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
... 1 more
>>>
Solution
It looks like you installed it only on the driver/gateway and not on the nodes/workers itself. The test you ran in the shell is running it locally, once you map a function via your SparkContext it gets distributed to the workers which don't have NLTK installed.
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