I guess you have a few options, keeping it high-level. Hopefully one is suitable for your particular situation.
1: Flip the container and then offset the position:
container.scale.x *= -1;
container.position.x = centerX - container.scale.x * containerWidth / 2;
See this working example: http://codepen.io/ianmcgregor/pen/BmbHe
2: Center the content inside the DisplayObjectContainer:
var content = new PIXI.Sprite(texture);
content.position.x = 0 - content.width / 2;
container.addChild(content);
container.scale.x *= -1;
3: Use a Sprite in place of DisplayObjectContainer. The drawback of this approach is that it will need to have a texture.