Tiago Ferreira, the author of "ROI Manager Tools" plugin for ImageJ, suggests the solution.
It is necessary to add the following macro to ImageJ that removes filename prefix from the label names in Results table.
macro "Rename Labels in Results Table" {
for (i=0; i<nResults; i++) {
oldLabel = getResultLabel(i);
delimiter = indexOf(oldLabel, ":");
newLabel = substring(oldLabel, delimiter+1);
setResult("Label", i, newLabel);
}
}
Save it to text file "Rename_Labels_in_Results_Table.txt" and put to "ImageJ\plugins\Analyze" directory.
Call it after the ROI manager's "Measure" command when the Results table is appeared. (Don't forget to set "Display Labels" checkbox in "Set Measurements" dialog before measurements.)