ATG runAssembler - order of modules import

Question

I'm trying to create ear with ATG runAssembler based on default commerce reference store and my main purpose is to override some jsp files of CRS.

I've created module MyModule (with submodule Storefront which contains my war file) and specified in Manifest all the required modules including Store.Storefront. For my opinion MyModule.Storefront should be the last one in runAssembler's imports, cause first all the required modules should be imported. I used the following command to create ear:

./runAssembler -overwrite -standalone $DYNAMO_ROOT/MyModule/deploy/MyModule.ear -m MyModule.Storefront

But I got the wrong order of imports:

...
Importing classes...
Importing classes for module DafEar
Importing classes for module MyModule.Storefront
Importing classes for module DafEar.Admin
Importing classes for module DafEar.base
Importing classes for module DCS.PublishingAgent
Importing classes for module Store.Storefront
Importing classes for module DCS.AbandonedOrderServices
...

What have I made wrong? What do I have to do to change the order? Do you know any other way to override CRS jsp pages not affecting the default files?

Thank you.

UPD: MANIFEST of MyModule.Storefront:

Manifest-Version: 1.0
Ant-Version: Apache Ant 1.7.0
ATG-Version: 10.1.2
ATG-Version-Full: 10.1.2
ATG-Config-Path: config/
ATG-Product: STF
ATG-Required: MyModule.Back Store.Storefront
ATG-Web-Module: j2ee-apps/Storefront/store.war

Answer 1

Move the module Store.Storefront to the begining of the field ATG-Required: the Nucleus orders the required modules with their position on this field.

Answer 2

When you are using layering concept of ATG then you should know that we override the properties of the existing properties for that particular component. This is not define to override the JSP pages. If you want to replace CRS JSP with custom JSP then you need to change the component(.properties files in config folder) value.