I don't know if I completely understand the problem. Here is my JSFiddle with what I believe you're asking for.
Here is the resulting HTML:
<button id="LearnMoreBtn">Learn More</button>
<button id="LearnMoreBtn2">Learn More2</button>
<div id="overlay"></div>
<div id="popup">
Popup contents here
<button id="CloseBtn">ClosePopup</button>
</div>
<div id="popup2">
Popup2 contents here
<button id="CloseBtn2">ClosePopup</button>
</div>
<div>
some other content that will be behind the popup
</div>