You should do one thing in order to get everything working: force AngularJS to actually use jQuery.
AngularJS includes jQlite in its source code, but it's not the same as jQuery. If you include jQuery before angular.js then Angular will use it instead of own implementation.
Thus just change this in index.html:
<script data-require="jquery@*" data-semver="2.0.3" src="http://code.jquery.com/jquery-2.0.3.min.js"></script>
<script data-require="angular.js@*" data-semver="1.2.9" src="http://code.angularjs.org/1.2.9/angular.js"></script>
(jQuery is before angular.js)