It's very good that you're making the move to use packages as that will help you a lot in the future. To get there, i suggest that you start refactoring your old code as well. I can understand not wanting to have to touch any of the old cgi files, and agree with that choice for now. But you will need to edit some of your included modules to get where you want to be.
Using your example as a baseline the goal is to leave myfile.cgi and all files like it as they are without changes, but everything else is fair game.
Step 1 - Create a new package to contain the functions and variables in common.pm
common.pm needs to be a package, but you can't make it so without effecting your old code. The workaround for this is to create a completely new package to contain all the functions and variables in the old file. This is also a good opportunity to create a better naming convention for all of your current and to be created packages. I'm going to assume that maybe you don't have it named as common.pm, but regardless, you should pick a directory and name that bits your project. I'm going to randomly choose the name MyProject::Core for the functions and variables previously held in common.pm
package MyProject::Core;
@EXPORT = qw();
@EXPORT_OK = qw($done func_c);
%EXPORT_TAGS = (all => [@EXPORT, @EXPORT_OK]);
use strict;
use warnings;
our $done = "bye";
sub func_c {
print @_, "\n";
}
1;
__END__
This new package should be placed in MyProject/Core.pm. You will need to include all variables and functions that you want exported in the EXPORT_OK list. Also, as a small note, I've added return characters to all of the print statements in your example just to make testing easier.
Secondly, edit your common.pm file to contain just the following:
use MyProject::Core qw(:all);
1;
__END__
Your myfile.cgi should work the same as it always does now. Confirm this before proceeding.
Next you can start creating your new packages that will rely on the functions and variables that used to be in the old common.pm. Your example common_obj.pm could be recoded to the following:
package common_obj;
use MyProject::Core qw($done func_c);
use base Exporter;
@EXPORT_OK = qw(func_obj finish);
use strict;
use warnings;
sub func_obj {func_c(@_);}
sub finish {print "$done\n";}
1;
__END__
Finally, myfile_obj.cgi is then recoded as the so:
use common_obj qw(func_obj finish);
use strict;
use warnings;
func_obj('hi');
finish();
1;
__END__
Now, I could've used @EXPORT instead of @EXPORT_OK to automatically export all the available functions and variables, but it's much better practice to only selectively import those functions you actually need. This method also makes your code more self-documenting, so someone looking at any file, can search to see where a particular function came from.
Hopefully, this helps you get on your way to better coding practices. It can take a long time to refactor old code, but it's definitely a worthwhile practice to constantly be updating ones skills and tools.