I solved it by do like this:
builder.RegisterType<Wrapper>().As<IWrapper>().WithParameter(new NamedParameter("uri", "http://test.com")).InstancePerApiRequest();
builder.Register(x => new RestClientWrapper("https://auth.test.com/")).Named<IWrapper>("auth");
builder.Register(x => new AuthController(x.ResolveNamed<IRestClientWrapper>("auth")));
You can read more aboit it here: https://code.google.com/p/autofac/wiki/TypedNamedAndKeyedServices