In your config.js file you can prevent any stripping by using the flag
config.allowedContent = true;
Reference : http://ckeditor.com/ckeditor_4.3_beta/samples/datafiltering.html
Similar question concerning CSS Classes: CKEditor automatically strips classes from div
For added advice often the ckEditor will infact still strip certain tags out. If this is happening you can add the following again to your config.js
file.
extraAllowedContent: 'data-toggle[*]{*}'