Try,
HTML:
<input type="checkbox" value="1" id="data1" name="data[]">
<input type="checkbox" value="2" id="data2" name="data[]">
<input type="checkbox" value="3" id="data3" name="data[]">
JS:
var allCheckBox = $("[id^='data']")
var count_checked = allCheckBox.filter(":checked").length;
if (count_checked == 0) {
alert("All check boxes are not checked");
} else if(count_checked != allCheckBox.length) {
alert("some of the check boxs are not checked");
} else{
return confirm("Are you sure you want to Close these Packet?");
}