Follow below steps:
Step1: Truncate table after disabling foreign key constraint and then again enable-
set foreign_key_checks=0;
truncate table mytable;
set foreign_key_checks=1;
Step2: Now at the time of bulk uploading select columns in table only those are in your csv file means un-check rest one (auto id also) and make sure that colums in csv should be in same order as in your table. Also autoid columns should not in your csv file.
You can use below command to upload data.
LOAD DATA LOCAL INFILE '/root/myfile.csv' INTO TABLE mytable fields terminated by ',' enclosed by '"' lines terminated by '\n' (field2,field3,field5);
Note: If you are working in windows environment then change accordinglyl.