devtools::install_github Error in function (type, msg, asError = TRUE) : <not set>

StackOverflow https://stackoverflow.com/questions/23287685

  •  09-07-2023
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Question

I'm trying to install a package via devtools::install_github for the first time

l@np350v5c:~$ R --vanilla
> library(devtools)

Attaching package: ‘devtools’

The following objects are masked from ‘package:utils’:

    ?, help

The following object is masked from ‘package:base’:

    system.file

> search()
 [1] ".GlobalEnv"        "package:devtools"  "package:stats"    
 [4] "package:graphics"  "package:grDevices" "package:utils"    
 [7] "package:datasets"  "package:methods"   "Autoloads"        
[10] "package:base"

but, eg

> install_github("devtools")
Installing github repo devtools/master from hadley
Downloading master.zip from https://github.com/hadley/devtools/archive/master.zip
Errore in function (type, msg, asError = TRUE)  : <not set>

The output of traceback() is

> traceback()
12: fun(structure(list(message = msg, call = sys.call()), class = c(typeName, 
        "GenericCurlError", "error", "condition")))
11: function (type, msg, asError = TRUE) 
    {
        if (!is.character(type)) {
            i = match(type, CURLcodeValues)
            typeName = if (is.na(i)) 
                character()
            else names(CURLcodeValues)[i]
        }
        typeName = gsub("^CURLE_", "", typeName)
        fun = (if (asError) 
            stop
        else warning)
        fun(structure(list(message = msg, call = sys.call()), class = c(typeName, 
            "GenericCurlError", "error", "condition")))
    }(77L, "<not set>", TRUE)
10: .Call("R_curl_easy_perform", curl, .opts, isProtected, .encoding, 
        PACKAGE = "RCurl")
9: curlPerform(curl = handle$handle, .opts = curl_opts$values)
8: make_request("get", hu$handle, hu$url, config = config)
7: GET(url, config)
6: (function (url, name = NULL, subdir = NULL, config = list(), 
       before_install = NULL, ...) 
   {
       if (is.null(name)) {
           name <- basename(url)
       }
       message("Downloading ", name, " from ", url)
       bundle <- file.path(tempdir(), name)
       request <- GET(url, config)
       stop_for_status(request)
       writeBin(content(request), bundle)
       on.exit(unlink(bundle), add = TRUE)
       install_local_single(bundle, subdir = subdir, before_install = before_install, 
           ...)
   })(dots[[1L]][[1L]], dots[[2L]][[1L]], subdir = NULL, config = list(), 
       before_install = function (bundle, pkg_path) 
       {
           desc <- file.path(pkg_path, "DESCRIPTION")
           DESCRIPTION <- readLines(desc, warn = FALSE)
           if (any(DESCRIPTION == "")) {
               DESCRIPTION <- DESCRIPTION[DESCRIPTION != ""]
           }
           cat(DESCRIPTION, file = desc, sep = "\n")
           append_field <- function(name, value) {
               if (!is.null(value)) {
                   cat("Github", name, ":", value, "\n", sep = "", 
                     file = desc, append = TRUE)
               }
           }
           append_field("Repo", conn$repo)
           append_field("Username", conn$username)
           append_field("Ref", conn$ref)
           append_field("SHA1", github_extract_sha1(bundle))
           append_field("Pull", conn$pull)
           append_field("Subdir", conn$subdir)
           append_field("Branch", conn$branch)
           append_field("AuthUser", conn$auth_user)
       }, dependencies = TRUE)
5: mapply(install_url_single, url, name, MoreArgs = list(subdir = subdir, 
       config = config, before_install = before_install, ...))
4: install_url(conn$url, subdir = conn$subdir, config = conn$auth, 
       before_install = github_before_install, ...)
3: FUN("devtools"[[1L]], ...)
2: vapply(repo, install_github_single, FUN.VALUE = logical(1), username, 
       ref, pull, subdir, branch, auth_user, password, auth_token, 
       ..., dependencies = TRUE)
1: install_github("devtools")

I tryied with another repo but it behaves the same way.

Any hint?

> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=it_IT.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=it_IT.UTF-8        LC_COLLATE=it_IT.UTF-8    
 [5] LC_MONETARY=it_IT.UTF-8    LC_MESSAGES=it_IT.UTF-8   
 [7] LC_PAPER=it_IT.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=it_IT.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] devtools_1.5

loaded via a namespace (and not attached):
[1] digest_0.6.4   evaluate_0.5.1 httr_0.2       memoise_0.1    parallel_3.1.0
[6] RCurl_1.95-4.1 stringr_0.6.2  tools_3.1.0    whisker_0.3-2 
Was it helpful?

Solution

Actually, I had the same issue and after installing RCurl it worked.

In order to install RCurl in ubuntu, write the following in your terminal:

sudo apt-get install libcurl4-openssl-dev

Then in R:

install.packages('RCurl')

And that's it!

OTHER TIPS

If you can't install the appropriate version of libcurl, you can try using the "install_git" function instead of "install_github". For example,

library(devtools)
install_git("https://github.com/hadley/devtools.git")

That worked for me.

Sorry, this was a bug in the r-cran-rcurl package in Debian. We eventually corrected it in the Debian distribution unstable, testing, and more recently stable (Jessie 8.2). In Ubuntu it is fixed in wily. Sorry for the problem, and thanks for using Debian or its derivatives !

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