I took a quick look and it mostly seems okay to me. I changed input() to raw_input() (two of them in your code) and noticed you had a double equals when you probably meant a single one
line 36:
totalRight == totalRight + 1
changed to
totalRight = totalRight + 1
which fixes your correct answer counter and line 68:
line3 = infile.readline ()
changed to
line1 = infile.readline ()
else it gets caught in your while loop forever. And I just copied line 54:
line1 = infile.readline ()
and pasted it so it is there twice to add another readline() call, just a lazy way of skipping the first line in your text file, since it seems to be a comment and not part of the answers and questions. You probably don't want to do that and just remove the comment from your text file. =b
With those changes, it seems to work fine for me.