https://aws.amazon.com/rds/faqs/
Can I encrypt connections between my application and my DB Instance using SSL?
Yes, however, this option is currently only supported for the MySQL, SQL Server, and PostgreSQL engines.
Amazon RDS generates an SSL certificate for each DB Instance. Once an encrypted connection is established, data transferred between the DB Instance and your application will be encrypted during transfer. If you require your data to be encrypted while “at rest” in the database, your application must manage the encryption and decryption of data. Also note that SSL support within Amazon RDS is for encrypting the connection between your application and your DB Instance; it should not be relied on for authenticating the DB Instance itself.
http://docs.aws.amazon.com/AmazonRDS/latest/UserGuide/CHAP_MySQL.html#MySQL.Concepts.SSLSupport