Well.. this was a pain.
<target name="make-bundle" depends="jar">
<!-- retrieve the dependencies -->
<ivy:retrieve conf="deploy" pattern="${dist.dir}/dependencies/[artifact].[ext]"/>
<delete dir="${dist.dir}/dependencies/uber" failonerror="false" />
<mkdir dir="${dist.dir}/dependencies/uber"/>
<!-- iterate over the dependencies -->
<for param="file">
<path>
<fileset dir="${dist.dir}/dependencies">
<include name="**/*.jar"/>
</fileset>
</path>
<sequential>
<propertyregex override="yes"
property="jarname" input="@{file}"
regexp=".*/([^/]*)\.jar" replace="\1"/>
<!-- put the spring.* jars into special sub-directories -->
<mkdir dir="${dist.dir}/dependencies/${jarname}"/>
<unzip dest="${dist.dir}/dependencies/${jarname}" src="@{file}">
<patternset>
<include name="**/META-INF/spring.*"/>
</patternset>
</unzip>
<!-- put everything else in the 'uber' directory -->
<unzip dest="${dist.dir}/dependencies/uber" src="@{file}">
<patternset>
<exclude name="**/META-INF/spring.*"/>
</patternset>
</unzip>
</sequential>
</for>
<!-- build the concatenated spring.* files -->
<mkdir dir="${dist.dir}/dependencies/META-INF"/>
<concat destfile="${dist.dir}/dependencies/META-INF/spring.handlers" fixlastline="true">
<fileset dir="${dist.dir}/dependencies/" includes="*/*/spring.handlers"/>
</concat>
<concat destfile="${dist.dir}/dependencies/META-INF/spring.schemas" fixlastline="true">
<fileset dir="${dist.dir}/dependencies/" includes="*/*/spring.schemas"/>
</concat>
<concat destfile="${dist.dir}/dependencies/META-INF/spring.tooling" fixlastline="true">
<fileset dir="${dist.dir}/dependencies/" includes="*/*/spring.tooling"/>
</concat>
<concat destfile="${dist.dir}/dependencies/META-INF/spring.factories" fixlastline="true">
<fileset dir="${dist.dir}/dependencies/" includes="*/*/spring.factories"/>
</concat>
<!-- build the uber jar! -->
<delete file="${dist.dir}/myproject-with-dependencies.jar" failonerror="false"/>
<jar destfile="${dist.dir}/myproject-with-dependencies.jar">
<!-- all dependency files except spring.* -->
<fileset dir="${dist.dir}/dependencies/uber"/>
<!-- the spring.* files -->
<fileset dir="${dist.dir}/dependencies/" includes="META-INF/*"/>
<!-- my project's classes & etc -->
<zipgroupfileset dir="${dist.dir}" includes="myproject.jar" />
<manifest>
<attribute name="Main-Class" value="${main.class}"/>
</manifest>
</jar>
</target>