Matplotlib Line3DCollection for time-varying colors
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24-12-2019 - |
Question
I'm attempting to plot 3D line trajectories that evolve over time, and I would like the colors to change to show that passage of time (e.g. from light blue to dark blue). However, there is a distinct lack of tutorials for using matplotlib's Line3DCollection
; this is the closest I could find, but all I'm getting is a white line.
Here's my code.
import matplotlib.pyplot as plot
from mpl_toolkits.mplot3d.axes3d import Axes3D
from mpl_toolkits.mplot3d.art3d import Line3DCollection
import numpy as np
# X has shape (3, n)
c = np.linspace(0, 1., num = X.shape[1])[::-1]
a = np.ones(shape = c.shape[0])
r = zip(a, c, c, a) # an attempt to make red vary from light to dark
# r, which contains n tuples of the form (r,g,b,a), looks something like this:
# [(1.0, 1.0, 1.0, 1.0),
# (1.0, 0.99998283232330165, 0.99998283232330165, 1.0),
# (1.0, 0.9999656646466033, 0.9999656646466033, 1.0),
# (1.0, 0.99994849696990495, 0.99994849696990495, 1.0),
# ...,
# (1.0, 1.7167676698312416e-05, 1.7167676698312416e-05, 1.0),
# (1.0, 0.0, 0.0, 1.0)]
fig = plot.figure()
ax = fig.gca(projection = '3d')
points = np.array([X[0], X[1], X[2]]).T.reshape(-1, 1, 3)
segs = np.concatenate([points[:-1], points[1:]], axis = 1)
lc = Line3DCollection(segs, colors = r)
ax.add_collection3d(lc)
ax.set_xlim(-0.45, 0.45)
ax.set_ylim(-0.4, 0.5)
ax.set_zlim(-0.45, 0.45)
plot.show()
However, here's what I get:
Just a bunch of white line segments, no shift in the color. What am I doing wrong? Thanks!
Solution
Your code works just fine, here's a bit of a sample. Basically, this is your code with a custom X set.
fig = plot.figure();
ax = fig.gca(projection = '3d')
X = [(0,0,0,1,0),(0,0,1,0,0),(0,1,0,0,0)]
points = np.array([X[0], X[1], X[2]]).T.reshape(-1, 1, 3)
r = [(1.0, 1.0, 1.0, 1.0), (1.0, 0.75, 0.75, 1.0), (1.0, 0.5, 0.5, 1.0), (1.0, 0.25, 0.25, 1.0), (1.0, 0.0, 0.0, 1.0)];
segs = np.concatenate([points[:-1], points[1:]], axis = 1)
ax.add_collection(Line3DCollection(segs,colors=list(r)))
plot.show()
And the plot looks like this:
OTHER TIPS
Wow, so it turns out the problem was that X
was actually not of shape (3, n)
, but rather something like (3, n^10)
, but I was only plotting n
points, hence the color appeared to never change (and why r
seems to have extremely small intervals...there were something like 58,000 points when I was plotting only 250).
So yes, it was a bug. Sorry about that; it works fine now.