When YSlow complains that your ETags are "misconfigured", it really means that ETags are present. If you read through the Yahoo Performance Rules regarding ETags, you'll see their basis for recommending that they be turned off.
You could test this by running YSlow on your site after turning off ETags with this setting in your .htaccess file:
FileETag none
In general I wouldn't worry too much about trying to keep ETags turned off. Yahoo's advice is more geared towards a multi-server site, so the rule doesn't necessarily apply in all cases.
Further reading:
- Good answers on this SO question: Why does google pagespeed asks to specify ETag even when cache headers are set
- Google PageSpeed has a good writeup on best practices for caching, including some explanations for proper use of ETags