Try using the MarkersOnly module:
require(["dojox/charting/Chart", "dojox/charting/axis2d/Default", "dojox/charting/plot2d/Lines", "dojox/charting/plot2d/MarkersOnly", "dojox/charting/Series", "dojo/ready"],
function(Chart, Default, Lines, MarkersOnly, Series, ready) {
ready(function(){
var chart = new Chart("simplechart");
chart.addPlot("plot_lines", { type: Lines });
chart.addPlot("plot_markers", { type: MarkersOnly });
chart.addAxis("x");
chart.addAxis("y", {vertical:true});
chart.addSeries("series_lines", [4, 2, 6, 4, 5, 8, 8, 1, 7, 9]);
// if you want your markers at data points 6 and 7;
chart.addSeries("series_markers", [{x:3,y:6}, {x:9,y:7}], { plot: "plot_markers" , stroke: { color: "blue" } });
chart.render();
});
});