You might use this:
<%@ Register Assembly="YourAssemblyName" Namespace="YourNewNamespace" TagPrefix="pf" %>
Regarding a Web Application
Microsoft says:
All code-behind class files and stand-alone class files in the project are compiled into a single assembly, which is placed in the Bin folder. Because this is a single assembly, you can specify attributes such as assembly name and version, as well as the location of the output assembly.
So now you should have a unique assembly.