It's a bit misleading, the folder is named 'node_clone' but the module is actually called 'clone', so you want:
module_load_include('inc', 'clone', 'clone.pages');
hook_init()
runs pretty early on so if you don't need the clone module's functions before hand, you'd be better off moving the code into the hook:
function mymodule_init(){
module_load_include('inc', 'clone', 'clone.pages');
clone_node_save(118);
}