The clear
is coming from the zen-clear()
mixin: https://github.com/JohnAlbin/compass-zen-grids/blob/master/stylesheets/zen/_grids.scss#L170
If you look at the source, there's additional parameters to the zen-grid-item
mixin (https://github.com/JohnAlbin/compass-zen-grids/blob/master/stylesheets/zen/_grids.scss#L71), which will allow you to turn off the box-sizing
:
@include zen-grid-item(4, 1, $box-sizing: content-box);
The other properties are a little more difficult to remove. If all else fails, you could overwrite Zen's mixins with one of your own.