Your problem is the token "]]". If the lexer collects this without having any memory of its past, it might be mistaken. So just don't do that!
The parser by definition remembers its left context, so you can get it to do the bracket matching correctly.
I would define your grammar this way:
FunctionCall. Expr ::= Expr "[" [Sequence] "]" ;
Part. Expr ::= Expr "[" "[" [Sequence] "]" "]" ;
with the lexer detecting only single "[" "]" as tokens.
An odd variant:
FunctionCall. Expr ::= Expr "[" [Sequence] "]" ;
Part. Expr ::= Expr "[[" [Sequence] "]" "]" ;
with the lexer also detecting "[[" as a token, since it can't be mistaken.