After some more trial & error, along with additional searching, I was able to resolve the issue by moving the common script and css files to _Layout.cshtml page, and only load the specific css or scripts using @RenderSection for a particular view.
I am still learning, but evidently it is the order of the js files that impact if they run or not. If anyone can shed further light on this, or direct me to an MVC resource on this subject that would be helpful. I hope this helps others in the same situation.