If you are already hiding the object from the navigation tree, you can filter on the same property by testing for exclude_from_nav
:
items = catalog()
for item in items:
if item.exclude_from_nav:
continue
# do something with all objects *not* excluded from navigation.
It is harder to filter out things that don't match a criteria. Using a test on the brain object like the above is a perfectly fine way to remove a small subset from your result set.
If you need handle a larger percentage of 'exceptions' you'll need to rethink your architecture, perhaps.