With web standards you have two possibilities: WebGL and CSS 3D Transforms
The browser support for WebGL isn't very good. But with 3D transforms, you will miss a few browsers as well.
Which technology better suits your needs is hard to tell without knowing too much, from what I imagine WebGL would be more appropriate for you.
Either way, you probably will have to include the Flash Version as a Fallback for browsers who don't support WebGL/3D Transforms.