Yes, in general you can tell that something is a user domain or a base just from looking at the ID. However the most reliable way to do it is in MQL like this:
{
"id": "/music/album",
"/type/type/domain": {
"/freebase/domain_profile/category": [{
"id": null
}]
}
}
Any domain that has the category /category/commons
is a Freebase commons domain.