Sounds like you'll want project variables to handle this where the variable contains the environment-specific text for each. You'd then use that variable in your objects instead of the hard-coded paths. The following would create a FileTable called "DocumentStore" and use the value for a variable called "FileTableDirectoryVariable" that you set up in your Project Properties - SQLCMD Variables. Set each of those in your Publish Profiles to use the correct directory, and you should be good. If you're using different filegroups for these tables, you should be able to tweak the FileGroup setting in a similar manner using a SQLCMD Variable.
CREATE TABLE DocumentStore AS FileTable
WITH (
FileTable_Directory = '$(FileTableDirectoryVariable)',
FileTable_Collate_Filename = database_default
);
GO