The 0.9 code is introducing quite a few changes, and as such it is not drop-in compatible with the Visual Studio plug-in as per the blog post (i.e. you can't just replace typescriptServices.js and it will work).
Until a 0.9 drop is released with an MSI that installs the updated VS plug-in also, it will only be usable from the command-line.
The command-line should work however, if you build, and then run the tsc.js script. Can you provide more details on your steps and what you are seeing? This is changing rather rapidly at the moment as work progresses, so make sure you have the very latest bits pulled so I can verify.