I have a bit of a different but similar scenario so I thought I would share. I have a primary maven application packaged into a war through the build (pom.xml packaging configuration). I wanted to add a jar file that is created from one package within our source code, and added into the assembled output along with the webapp war. This allows us to deliver the web application along with a cli tool separately. I didn't want to reconfigure the pom.xml to be multi-module, but just to add a jar as a separate executable within our existing structure. I was banging my head against this for a while.
First, I ended up deleting my entire .m2 directory with maven repositories locally. It appears there may have been an issue for me here, because my ultimate code that worked seems to be the same as what wasn't working originally. I suspect the reasoning for this was I was trying different versions of libraries and was creating conflicts, but who knows. First suggestion I have if you are having issues is delete your .m2 folder and try from scratch.
Also reference @Adam Howell's answer because that is the fundamentals. I created a simplified example project to figure out why nothing was happening and in there I realized i forgot to prefix the folder structure as src/main/java... doh! Of course in my existing project, this was not the case.
And here is my plugin code i inserted in my pom.xml that worked:
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>3.2.0</version>
<configuration>
<archive>
<manifest>
<addClasspath>true</addClasspath>
<mainClass>com.myCompany.app.cli.CLITool</mainClass>
</manifest>
</archive>
<outputDirectory>${project.build.directory}</outputDirectory>
<finalName>our-cli</finalName>
</configuration>
<executions>
<execution>
<phase>compile</phase>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
I am pretty sure you can change the phase you want this done in, I figured earlier on in compile made since to ensure it was available for packaging later. I'm not very experienced with Maven though, so note that this may not be semantically in-line with Maven conventions.
And it worked! Not sure why this took me hours to work out although it did. This I just updated my bin.xml to include the jar file in my assembled deliverable, and Voilah! I have a jar executable separate from my webapp that I can use as a command-line interface tool.