Well,
I'm answering my own question as I found an answer, a better follow-up would be nice but I think this gets to the point.
I followed the instructions on this page:
http://www.h2database.com/javadoc/org/h2/constant/SysProperties.html
And set the sortNullsHigh property on runtime, before loading the driver:
System.setProperty("h2.sortNullsHigh", "true");
Maybe later we will see a way to get it into a config file, after all the central unit tests run with jenkins/maven and there the property is set properly.
Regards